You can access sample BLAST HTML input forms using URLs: Temporary directory for BLAST overview images (TmpGifs) should have 777 permission, and logfiles (should have 666.Īfter you have uncompressed the distribution file, "blast" directory will be created. Gzip -d tar -xvpf Please note that parameter "p" in tar options is significant - it will preserve file access options stored in the distribution. Installation of the Standalone WWW serverĪfter downloading the file to your computer, place it into document directory of HTTPD server and uncompress it by Added option to print alternative alignment with specific color schema.Added possibility to print Taxonomy reports.Added support for client/server interface for gi/accession.PSI and PHI Blast were added to this distribution.Added new advanced statistics to PSI Blast and ability to produce Smith-Waterman alignments.Added possibility to have multiple FASTA query input - batch searches.Added possibility to limit search to results of Entrez query (Regular.Out of Frame BLASTX (OOF) now available for testing and suggestions.All programs have been recompiled and made synchronous to the latest NCBI tookit release. Added option to mask lower case in query.
#Blast 2 sequences archive#
Removed formatdb, makemat and copymat binaries from the archive - those should be taken from the NCBI BLAST executables archive.Removed xmlblast.cgi and other unneeded XML related files.Removed limit on the total length of database names.Recompiled all binaries to include recent bug fixes.All binaries recompiled with the newest version of the toolkit.Added support for multi-query XML output.All binaries recompiled with the newest version of the NCBI C toolkit libraries.Corrected paths to the graphical overview for PSI/PHI BLAST output.Added images for the Linkout and UniGene links from the BLAST output.Fixed a bug in processing of the configuration file that limited allowed number of databases.
#Blast 2 sequences code#
Introduction to the Standalone WWW Blast server